species:   Clros
pid:       PID2217
parent:    cro-mir-7
paralog:   
locus:     CADEHS020000012.2:1157823-1157879
matures:   ['GCCGAUUAGUAGUUGGGUCGG', 'AUCCCGUCUGCUCUCCGCAC']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000012.2:1157823-1157879

601 out of bounds
112 alignments
112 proper strand
109 stranded perfect matches

********************              ***********************
AUCCCGUCUGCUCUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG
..((((.(((((.((.((.(.(((......))).).)).))..))))).))))....
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=60 c
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 c*
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=60 ma
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 ma*

AUCCCGUCUGCUCUCCGCACGUUAAGCUAGUAAGG---------------------- l=35 a=1 
--CCCGUCUGCUCUCCGCA-------------------------------------- l=17 a=1 
------------CUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGU-------- l=37 a=1 
-------------UCCGCACGUUAAGCUAGUAAGGGGCCG----------------- l=27 a=1 
--------------CCGCACGUUAAGCUAGUAAGGGGC------------------- l=24 a=3 
-------------------CGUUAAGCUAGUAAGGGGCC------------------ l=20 a=1 
----------------------UAAGCUAGUAAGGGGC------------------- l=16 a=1 
------------------------------UAAGGGGCCGAUUAGUAGUU------- l=20 a=1 
------------------------------UAAGGGGCCGAUUAGUAGUUGGGUC-- l=25 a=1 
----------------------------------GGGCCGAUUAGUAGUUGGG---- l=19 a=1 
----------------------------------GGGCCGAUUAGUAGUUGGGUCGG l=23 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGGUC-- l=20 a=2 
-----------------------------------GGCCGAUUAGUAGUUGGGUCGG l=22 a=8 
------------------------------------GCCGAUUAGUAGUUG------ l=15 a=1 
------------------------------------GCCGAUUAGUAGUUGG----- l=16 a=2 
------------------------------------GCCGAUUAGUAGUUGGG---- l=17 a=8 
------------------------------------GCCGAUUAGUAGUUGGGU--- l=18 a=5 
------------------------------------GCCGAUUAGUAGUUGGGUC-- l=19 a=6 
------------------------------------GCCGAUUAGUAGUUGGGUCG- l=20 a=2 
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=60 (c,ma)
------------------------------------GCCGAUUAGUAGUUGGGUCGa l=21 a=1 
------------------------------------GCCcAUUAGUAGUUGGGUCGG l=21 a=1 
-------------------------------------CCGAUUAGUAGUUGGG---- l=16 a=1 
-------------------------------------CCGAUUAGUAGUUGGGU--- l=17 a=1 
-------------------------------------CCGAUgAGUAGUUGGGU--- l=17 a=1 

mb-01111
ax-1001011
ku-01
ss-101111101110
fn-111
